All functions
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calcCurves()
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Calculate Relative Yield, YPR, SPR, SSB, and Recruitment curves for F/M |
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DataDir()
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Report the location of the Data Files |
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FilterSmooth()
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Kalman filter and Rauch-Tung-Striebel smoother |
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getFMfun()
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Calculate F/M given SPR and other parameters |
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initialize(<LB_lengths>)
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Create a new LB_lengths object |
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initialize(<LB_obj>)
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Create a new LB_obj object |
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initialize(<LB_pars>)
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Create a new LB_pars object |
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LBSPRfit()
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Fit LBSPR model to length data |
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LBSPRfit_()
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Internal function to fit LBSPR model to length data |
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LBSPRopt()
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Optimisation Routine for fitting LBSPR |
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LBSPRsim()
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LBSPR Simulation Model |
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LBSPRsim_()
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Internal LBSPR Simulation Model |
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LBSPR_NLLabsel()
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LBSPR Optimization function for age-based selectivity model |
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LBSPR_NLLgtg()
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LBSPR Optimization function for GTG model |
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LB_lengths-class
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An S4 class containing length data |
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LB_obj-class
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An S4 class containing all parameters for the LBSPR model |
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LB_pars-class
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An S4 class containing life history and other parameters |
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plotCurves()
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Plot the Relative Yield, YPR, SPR, SSB, and Recruitment curves |
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plotEsts()
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Plot LBSPR model estimates |
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plotMat()
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Plot the maturity-at-length and selectivity-at-length curves |
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plotSim()
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General plotting function for simulated data |
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plotSize()
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Plot the size data and model fits |
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plotSPRCirc()
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Circle of estimated SPR and target and limit points |
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plotTarg()
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Plot sampled length structure against target simulated size composition |
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Shiny()
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Run a Shiny Application |