A function that fits the LBSPR model to length data
LBSPRfit(LB_pars = NULL, LB_lengths = NULL, yrs = NA, Control = list(), pen = TRUE, verbose = TRUE, useCPP = TRUE, ...)
LB_pars | an object of class |
---|---|
LB_lengths | an object of class |
yrs | index of years to include. If NA the model is run on all years |
Control | a list of control options for the LBSPR model. |
pen | apply a penalty if estimate of selectivity is very high? |
verbose | display messages? |
useCPP | use cpp optimization code? |
... | additional parameters to pass to |
a object of class 'LB_obj'
The Control options are:
modtype
Model Type: either Growth-Type-Group Model (default: "GTG") or Age-Structured ("absel")
maxsd
Maximum number of standard deviations for length-at-age distribution (default is 2)
ngtg
Number of groups for the GTG model. Default is 13
P
Proportion of survival of initial cohort for maximum age for Age-Structured model. Default is 0.01
Nage
Number of pseudo-age classes in the Age Structured model. Default is 101
maxFM
Maximum value for F/M. Estimated values higher than this are trunctated to maxFM
. Default is 4
# NOT RUN { MyFit <- LBSPRfit(LBparameters, LBlengths) MyFit@Ests # }